Optimization of Biofilm Formation in Fungi Isolated from Crude Oil Refinery Sludge for Enhanced Bioremediation

Optimization of Biofilm Formation in Fungi Isolated from Crude Oil Refinery Sludge for Enhanced Bioremediation

Authors

  • Uchechukwu Nebo Federal University Oye-Ekiti
  • Oluwasogo Department of Microbiology, School of Life Science, Federal University of Technology, Akure, Ondo State, Nigeria
  • Juwon

DOI:

https://doi.org/10.51459/jostir.2026.2.1.0252

Abstract

Biofilm formation enhances the survival of filamentous fungi in hydrocarbon contaminated environments. Optimization of biofilm formation is significant in selecting fungal species with biodegradation potential. In this study, fungal isolates including Aspergillus fumigatus, Rhizopus nigricans, Aspergillus aculeatus SFO13 and Fusarium chlamydosporum were assessed for biofilm forming ability under varying culture conditions. The effect of carbon sources (glucose, sucrose, crude oil), pH, temperature and incubation period on biofilm production were evaluated in a microtiter plate assay using one-factor-at-a-time (OFAT) method. The biofilm mass was quantified spectrophotometrically (OD560). Result showed that optimal biofilm (0.92 nm) formation occurred at 28℃ after 24 h incubation at pH 5-7 in the presence of glucose or sucrose as carbon source. Extended incubation period favoured biofilm (0.22 nm) development when crude oil was used as sole carbon source. Aspergillus aculeatus SFO13 and Aspergillus fumigatus exhibited superior biofilm-forming capacity (0.22 nm and 0.15 nm respectively) in oil rich medium. This study demonstrates that controlled optimization of growth conditions significantly enhanced fungal biofilm formation and crude oil utilization, supporting the application of these parameters for sustainable bioremediation strategies.

 

 

References

References

Abbasnezhad, H., Gray, M. and Foght, J. M. (2011). Influence of adhesion on aerobic biodegradation and bioremediation of liquid hydrocarbons. Applied Microbiology and Biotechnology, 92(4): 653-675.

Ali, H., Khan, E. and Ilahi, I. (2019). Environmental chemistry and ecotoxicology of hazardous heavy metals: environmental persistence, toxicity, and bioaccumulation. Journal of chemistry, 2019(1): 6730305.

Alotaibi, G. F. and Bukhari, M. A. (2021). Factors influencing bacterial biofilm formation and development. Am. J. Biomed. Sci. Res, 12(6): 617-626.

Andrade-Linares, D. R., Veresoglou, S. D. and Rillig, M. C. (2016). Temperature priming and memory in soil filamentous fungi. Fungal Ecology, 21: 10-15.

Arora, J., Kumari, A., Ranjan, A., Rajput, V. D., Shende, S., Prazdnova, E. V. E., ... and Jindal, T. (2024). Microbial adaptation in different extreme environmental conditions and its usefulness in differently polluted soil. In Extremophiles for Sustainable Agriculture and Soil Health Improvement (pp. 47-62). Cham: Springer Nature Switzerland.

Balan, B., Dhaulaniya, A. S., Varma, D. A., Sodhi, K. K., Kumar, M., Tiwari, M. and Singh, D. K. (2021) Microbial biofilm ecology, in silico study of quorum sensing receptor-ligand interactions and biofilm mediated bioremediation. Archives in Microbiology, 203: 13–30.

Barik, D., Rakhi Mol, K. M., Anand, G., Nandamol, P. S., Das, D. and Porel, M. (2025). Environmental pollutants such as endocrine disruptors/pesticides/reactive dyes and inorganic toxic compounds metals, radionuclides, and metalloids and their impact on the ecosystem. In Biotechnology for Environmental Sustainability (pp. 391-442). Singapore: Springer Nature Singapore.

Bokade, P. and Bajaj, A. (2023). Molecular advances in mycoremediation of polycyclic aromatic hydrocarbons: Exploring fungal bacterial interactions. Journal of Basic Microbiology, 63(3-4), 239-25.

Cheesbrough, M (2006) District laboratory practice in tropical countries. 2nd Edn. New York (USA): Cambridge University Press pp 58-96

Das, S. and Kungwani, N. A. (Eds.). (2022). Understanding microbial biofilms: Fundamentals to applications. Elsevier.

de Vasconcellos, A. A., Gonçalves, L. M., Cury, A. A. D. B. and da Silva, W. J. (2014). Environmental pH influences Candida albicans biofilms regarding its structure, virulence and susceptibility to fluconazole. Microbial pathogenesis, 69: 39-44.

Flemming, H. C., Neu, T. R. and Wingender, J. (Eds.). (2016). The perfect slime: microbial extracellular polymeric substances (EPS). IWA publishing.6.

Gonçalves, B., Fernandes, L., Henriques, M. and Silva, S. (2020). Environmental pH modulates biofilm formation and matrix composition in Candida albicans and Candida glabrata. Biofouling, 36(5): 621-630.

Harris, C., Hillock, T., Humes, A., Orullian, J., Neely, L. and Johnson, B. (2018). Investigation of the synergistic effect of select phytochemical containing oils and amphotericin B to inhibit fungal biofilm growth in Rhizopus Oryzae. Proceedings of the National Conference on Undergraduate Research (NCUR), 429-435.

Hawkes, C. V., Kivlin, S. N., Rocca, J. D., Huguet, V., Thomsen, M. A. and Suttle, K. B. (2011). Fungal community responses to precipitation. Global Change Biology, 17(4): 1637-1645.

Hernández-Benítez, J. A., Santos-Ocampo, B. N., Rosas-Ramírez, D. G., Bautista-Hernández, L. A., Bautista-de Lucio, V. M., Pérez, N. O. and Rodríguez-Tovar, A. V. (2025). The Effect of Temperature over the Growth and Biofilm Formation of the Thermotolerant Aspergillus flavus. Journal of Fungi, 11(1): 53.

Jerez, S., Ventura, M., Molina, R., Pariente, M. I., Martínez, F. and Melero, J. A. (2021). Comprehensive characterization of an oily sludge from a petrol refinery: A step forward for its valorization within the circular economy strategy. Journal of Environmental Management, 285: 112124.

Luo, X., Xu, X., Cao, R., Wan, Q., Wang, J., Xu, H., ... and Huang, T. (2021). The formation kinetics and control of biofilms by three dominant fungi species isolated from groundwater. Journal of Environmental Sciences, 109: 148-160.

Martinez, L. R. and Casadevall, A. (2007). Cryptococcus neoformans biofilm formation depends on surface support and carbon source and reduces fungal cell susceptibility to heat, cold, and UV light. Applied and environmental microbiology, 73(14): 4592-4601.

Martínez‐García, L. B., De Deyn, G. B., Pugnaire, F. I., Kothamasi, D. and van der Heijden, M. G. (2017). Symbiotic soil fungi enhance ecosystem resilience to climate change. Global Change Biology, 23(12): 5228-5236.

McFall, A., Coughlin, S. A., Hardiman, G. and Megaw, J. (2024). Strategies for biofilm optimization of plastic-degrading microorganisms and isolating biofilm formers from plastic-contaminated environments. Sustainable Microbiology, 1(1), qvae012.

Nebo, U. C., Arotupin, D. J. and Olalemi, A. O. (2025). Biodegradation of heavy petroleum polycyclic aromatic hydrocarbons (PAHs) in polluted soil by biofilm-forming Bacillus tropicus UCB and Pseudomonas aeruginosa SYLI isolated from crude oil-contaminated sludge. Biodegradation 36: 97. https://doi.org/10.1007/s10532-025-10195-5

Paramanik, D. and Bal, M. (2025). Hydrocarbon waste: the unseen threat to our biosphere—origins, traits, fate, and environmental impact. In Environmental Hydrocarbon Pollution and Zero Waste Approach Towards a Sustainable Waste Management (pp. 1-19). Cham: Springer Nature Switzerland.

Pemmaraju, S. C., Pruthi, P. A., Prasad, R. and Pruthi, V. (2016). Modulation of Candida albicans biofilm by different carbon sources. Mycopathologia, 181(5): 341-352.

Qureshi, N., Annous, B. A., Ezeji, T. C., Karcher, P. and Maddox, I. S. (2005). Biofilm reactors for industrial bioconversion processes: employing potential of enhanced reaction rates. Microbial cell factories, 4(1): 24.

Shay, R., Wiegand, A. A. and Trail, F. (2022). Biofilm formation and structure in the filamentous fungus Fusarium graminearum, a plant pathogen. Microbiology spectrum, 10(4): e00171-22.

Simões, L. C., Simões, M. and Lima, N. (2015). Kinetics of biofilm formation by drinking water isolated Penicillium expansum. Biofouling, 31(4): 349-362.

Singh, R., Shivaprakash, M. R., and Chakrabarti, A. (2011). Biofilm formation by zygomycetes: quantification, structure and matrix composition. Microbiology, 157(9): 2611-2618.

Siqueira, V. M. and Lima, N. (2013). Biofilm formation by filamentous fungi recovered from a water system. Journal of Mycology, 2013(1): 152941.

Stepanovic, S., Vukovic, D., Hola, V., Di Bonaventura, G., Djukic, S., C ´irkovic´ I. and Ruzicka, F. (2007). Quantification of biofilm in microtiter plates: overview of testing conditions and practical recommendations for assessment of biofilm production by staphylococci. APMIS, 115:891–9.

Teng, Q., Zhang, D. and Yang, C. (2021). A review of the application of different treatment processes for oily sludge. Environmental Science and Pollution Research, 28(1): 121-132.

Wang, Z. W. and Chen, S. (2009). Potential of biofilm-based biofuel production. Applied microbiology and biotechnology, 83(1): 1-18.

Zahari, N. Z., Tuah, P. M., Ali, S. A. M. and Sabullah, M. K. (2022, May). Microbial growth rate and distribution of doubling time at different concentration of oil sludge medium. In IOP Conference Series: Earth and Environmental Science, Vol. 1022(1): Pp. 012075. IOP Publishing.

Zhu, S., Li, M., Qian, T., Chen, J. and Pan, T. (2025). Influence of Surfactants on Interfacial Microbial Degradation of Hydrophobic Organic Compounds. Catalysts, 15(2): 187.

Obire, O. and Wemedo, S. A. (2002) Seasonal Effect on the Bacterial and Fungal Population of an Oilfield Wastewater-Polluted Soil in Nigeria. Journal of Applied Sciences and Environmental Management, 6: 17-21.

Jabuk, S. I. A. and Jarallah, E. M. (2021). Quantification biofilm formation by Staphylococcus aureus isolated from Iraqi meat. P J M H S, 15(1): 370-373.

Arora, J., Kumari, A., Ranjan, A., Rajput, V. D., Shende, S., Prazdnova, E. V. E., ... and Jindal, T. (2024). Microbial adaptation in different extreme environmental conditions and its usefulness in differently polluted soil. In Extremophiles for Sustainable Agriculture and Soil Health Improvement (pp. 47-62). Cham: Springer Nature Switzerland.

Martinez, L. R. and Casadevall, A. (2007). Cryptococcus neoformans biofilm formation depends on surface support and carbon source and reduces fungal cell susceptibility to heat, cold, and UV light. Applied and environmental microbiology, 73(14): 4592-4601.

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Published

2026-05-20

How to Cite

Nebo, U., Olalemi, A., & Arotupin, D. (2026). Optimization of Biofilm Formation in Fungi Isolated from Crude Oil Refinery Sludge for Enhanced Bioremediation. Journal of Science, Technology and Innovation Research, 2(1). https://doi.org/10.51459/jostir.2026.2.1.0252

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